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USD 250 /hr
Hire Dr. Lucy L.
United States
USD 250 /hr

Healthcare Data Scientist | 10+ years experience | Python/R/SQL | AI/ML/Stats

Profile Summary
Subject Matter Expertise
Services
Research Meta-Research, Scientific and Technical Research, Systematic Literature Review
Consulting Scientific and Technical Consulting
Data & AI Predictive Modeling, Statistical Analysis, Algorithm Design-ML, Data Visualization, Text Mining & Analytics, Data Cleaning, Data Processing, Data Insights
Work Experience

Consulting Data Scientist (Founder)

Feature Health Inc

April 2023 - Present

Principal Data Scientist

The Public Health Company

March 2021 - December 2021

Bioinformatics Scientist

Chan Zuckerberg Biohub

June 2018 - March 2021

Postdoctoral Fellow

Harvard T.H. Chan School of Public Health

January 2017 - June 2018

Education

PhD (Infectious Disease Epidemiology)

Imperial College London

October 2013 - February 2017

Computational Biology MPhil (Applied Mathematics and Theoretical Physics)

UNIVERSITY OF CAMBRIDGE

January 2012 - August 2013

Biology BSc (Life Sciences)

Imperial College London

October 2009 - June 2012

Certifications
Publications
JOURNAL ARTICLE
Lucy Li, Sharline Madera, Nicole McNeil, Paula Hayakawa Serpa, Jack Kamm, Christy Pak, Carolyn Caughell, Amy Nichols, David Dynerman, Estella Sanchez-Guerrero, et al. (2023). Prolonged silent carriage, genomic virulence potential and transmission between staff and patients characterize a neonatal intensive care unit (NICU) outbreak of methicillin-resistant <i>Staphylococcus aureus</i> (MRSA) . Infection Control &amp; Hospital Epidemiology.
Eran Mick, Alexandra Tsitsiklis, Natasha Spottiswoode, Saharai Caldera, Paula Hayakawa Serpa, Angela M. Detweiler, Norma Neff, Angela Oliveira Pisco, Lucy M. Li, Hanna Retallack, et al. (2022). Upper airway gene expression shows a more robust adaptive immune response to SARS-CoV-2 in children . Nature Communications.
Leon Tran, Dai-Wei Huang, Nien-Kung Li, Lucy M. Li, Julia Palacios, Hsiao-Han Chang (2022). The impact of the COVID-19 preventive measures on influenza transmission: molecular and epidemiological evidence . International Journal of Infectious Diseases.
James Peng, Jamin Liu, Sabrina A Mann, Anthea M Mitchell, Matthew T Laurie, Sara Sunshine, Genay Pilarowski, Patrick Ayscue, Amy Kistler, Manu Vanaerschot, et al. (2022). Estimation of Secondary Household Attack Rates for Emergent Spike L452R Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants Detected by Genomic Surveillance at a Community-Based Testing Site in San Francisco . Clinical Infectious Diseases.
Lucy Li, Kyle Kawagoe, Mark Rychnovsky, S. Chang, Greg Huber, Jonathan Miller, Reuven Pnini, Boris Veytsman, David Yllanes (2021). Epidemic dynamics in inhomogeneous populations and the role of superspreaders . Physical Review Research.
Batson, Joshua and Dudas, Gytis and Haas-Stapleton, Eric and Kistler, Amy L and Li, Lucy M and Logan, Phoenix and Ratnasiri, Kalani and Retallack, Hanna(2021). Single mosquito metatranscriptomics identifies vectors, emerging pathogens and reservoirs in one assay. Elife. 10. p. e68353. eLife Sciences Publications Limited
Huber, Greg and Kamb, Mason and Kawagoe, Kyle and Li, Lucy M and McGeever, Aaron and Miller, Jonathan and Veytsman, Boris and Zigmond, Dan(2021). A minimal model for household-based testing and tracing in epidemics. Physical biology. 18. (4). p. 045002. IOP Publishing
Shah, Sachin J and Barish, Peter N and Prasad, Priya A and Kistler, Amy and Neff, Norma and Kamm, Jack and Li, Lucy M and Chiu, Charles Y and Babik, Jennifer M and Fang, Margaret C and others(2020). Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: A retrospective cohort study of patients with and without COVID-19. EClinicalMedicine. 27. p. 100518. Elsevier
Mick, Eran and Kamm, Jack and Pisco, Angela Oliveira and Ratnasiri, Kalani and Babik, Jennifer M and Casta{\~n}eda, Gloria and DeRisi, Joseph L and Detweiler, Angela M and Hao, Samantha L and Kangelaris, Kirsten N and others(2020). Upper airway gene expression reveals suppressed immune responses to SARS-CoV-2 compared with other respiratory viruses. Nature communications. 11. (1). p. 1--7. Nature Publishing Group
Li, Lucy M and Ayscue, Patrick(2020). Using viral genomics to estimate undetected infections and extent of superspreading events for COVID-19. medRxiv. Cold Spring Harbor Laboratory Press
(2019). Sentinel Case of Candida auris in the Western United States Following Prolonged Occult Colonization in a Returned Traveler from India . Microbial Drug Resistance.
(2019). Bergeyella cardium: Clinical Characteristics and Draft Genome of an Emerging Pathogen in Native and Prosthetic Valve Endocarditis . Open Forum Infectious Diseases.
Crawford, Emily and Kamm, Jack and Miller, Steve and Li, Lucy M. and Caldera, Saharai and Lyden, Amy and Yokoe, Deborah and Nichols, Amy and Ramirez-Avila, Lynn and Tran, Nam K. and others(2019). Investigating Transfusion-Related Sepsis using Culture-Independent Metagenomic Sequencing. Clinical Infectious Diseases. 71. (5). p. 1179--1185.
Saha, Senjuti and Ramesh, Akshaya and Kalantar, Katrina L and Malaker, Roly and Hasanuzzaman, Md and Khan, Lillian M and Mayday, Madeline Y and Sajib, Mohammad Saiful Islam and Li, Lucy M and Langelier, Charles and others(2019). Unbiased metagenomic sequencing for pediatric meningitis in Bangladesh reveals neuroinvasive Chikungunya virus outbreak and other unrealized pathogens. mBio. 10. (6). p. e02877--19.
(2018). Serotype-specific immune responses to pneumococcal conjugate vaccine among children are significantly correlated by individual: Analysis of randomized controlled trial data . Vaccine.
(2017). Quantifying Transmission Heterogeneity Using Both Pathogen Phylogenies and Incidence Time Series . Molecular Biology and Evolution.
Fraser, Christophe and Li, Lucy M(2017). Coalescent models for populations with time-varying population sizes and arbitrary offspring distributions. bioRxiv. p. 131730. Cold Spring Harbor Laboratory
(2014). Genomic analysis of emerging pathogens: methods, application and future trends . Genome Biology.
Sonnhammer EL, Gabaldón T, Sousa da Silva AW, Martin M, Robinson-Rechavi M, Boeckmann B, Thomas PD, Dessimoz C, Quest for Orthologs consortium, Bioinformatics (Oxford, England), 2014, vol. 30, no. 21, pp. 2993-2998, 2014 .
Huber, Greg and Kamb, Mason and Kawagoe, Kyle and Li, Lucy and McGeever, Aaron and Miller, Jonathan and Veytsman, Boris and Zigmond, DanEstimation of the severeness rate, death rate, household attack rate and the total number of COVID-19 cases based on 16 115 Polish surveillance records.