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Hire Harish K.

India

Bioinformatician - 5 years of experience in Genomics, Metagenomics and Transcriptomics

Profile Summary

Genomics - PacBio (w HiFi), ONT, 10X, BNG and HiC data. Finished multiple genomes with Annotations and auxiliary analyses. RNASeq/IsoSeq - Batch correction, Differential Expression, Pathways and Ontology analyses. Metagenomics - Amplicon Seq analyses on both PacBio and Illumina PE data. PacBio and Illumina based metagenomic assembly, binning and analyses.

Subject Matter Expertise

• ★ Genetics
• ☆ Transcriptomics
• ☆ Comparative Genomics
• ☆ Genomics

Services

• Research
• Consulting
• Data & AI

Research Feasibility Study, Fact Checking, Systematic Literature Review, Secondary Data Collection

Consulting Scientific and Technical Consulting

Data & AI Statistical Analysis, Data Visualization

Work Experience

Scientist

Nucleome Informatics Private Limited

April 2017 - Present

Scientist - Bioinformatics

Nucleome Informatics Private Limited

April 2017 - September 2020

Research Assistant

Centre for Cellular and Molecular Biology CSIR

August 2015 - March 2017

Education

BS MS

Indian Institute of Science Education and Research - Bhopal

August 2010 - June 2015

Certifications

• Certification details not provided.

Publications

JOURNAL ARTICLE

(2020). Comparative transcriptome profiling of pomegranate genotypes having resistance and susceptible reaction to Xanthomonas axonopodis pv. punicae . Saudi Journal of Biological Sciences.

Sudhakar, Ananthasayanam and Kothandaraman, Harish and Nayee, Nilesh and Saha, Sujit and Baghel, Dushyant Singh and Kishore, G and Peddamma, Sathish and Singh, Ram Bahadur and Schatz, Michael(2020). First near complete haplotype phased genome assembly of River buffalo (Bubalus bubalis). bioRxiv. p. 618785. Cold Spring Harbor Laboratory

Habib, Bilal and Ghaskadbi, Pallavi and Nigam, Parag and Modi, Shrushti and Kumar, Peddamma Sathish and Sharma, Kanika and Singh, Vidhya and Kumar, Bipin and Tripathi, Abhishek and Kothandaraman, Harish and others(2018). The Cuon Enigma: Genome survey and comparative genomics of the endangered Dhole (Cuon alpinus). bioRxiv. p. 443119. Cold Spring Harbor Laboratory

Reddy, P Anuradha and Kothandaraman, Harish and Arun, PV Parvati Sai and Challagandla, Anil and Baghel, Dushyant Singh(2018). High coverage genome sequencing and identification of genomic variants in Bengal tiger (Panthera tigris tigris). bioRxiv. p. 306399. Cold Spring Harbor Laboratory

Nizamuddin, Sheikh and Dubey, Shivendra and Singh, Sakshi and Sharma, Saurav and Mishra, Anshuman and Harish, K and Joshi, Harsh and Thangaraj, Kumarasamy(2017). Genetic polymorphism of Cytochrome-P450-2C9 (CYP2C9) in Indian populations. bioRxiv. p. 113993. Cold Spring Harbor Laboratory

(2016). Prediction of peptidoglycan hydrolases- a new class of antibacterial proteins . BMC genomics.

(2016). Reconstruction of Bacterial and Viral Genomes from Multiple Metagenomes . Frontiers in Microbiology.